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2011 Publications
- Sykes, A. G.; Ballagh, R. J.. Probing the Quantum State of a 1D Bose Gas Using Off-Resonant Light Scattering. Physical Review Letters 2011 10.1103/PhysRevLett.107.270403
- Bonachela, Juan A.; Raghib, Michael; Levin, Simon A.. Dynamic model of flexible phytoplankton nutrient uptake. Proceedings of the National Academy of Sciences 2011 10.1073/pnas.1118012108
- Parthasarathi, R.; Bellesia, G.; Chundawat, S. P. S.; Dale, B. E., et al. Insights into Hydrogen Bonding and Stacking Interactions in Cellulose. Journal of Physical Chemistry A 2011 10.1021/jp203620x
- Muniz, Rodrigo A.; Rahmani, Armin; Martin, Ivar. Fractionalization in spontaneous integer quantum Hall systems. arXiv:1112.3347 2011 http://arxiv.org/abs/1112.3347
- Akimov, A. V.; Sinitsyn, N. A.. Sensitivity field for nonautonomous molecular rotors. Journal of Chemical Physics 2011 10.1063/1.3667196
- Khare, Avinash; Rasmussen, Kim Ø; Samuelsen, Mogens R.; Saxena, Avadh. Exact solutions of a two-dimensional cubic–quintic discrete nonlinear Schrödinger equation. Physica Scripta 2011 10.1088/0031-8949/84/06/065001
- Zhou, Caizhi; Beyerlein, Irene J.; LeSar, Richard. Plastic deformation mechanisms of fcc single crystals at small scales. Acta Materialia 2011 10.1016/j.actamat.2011.08.032
- Reichhardt, Charles; Reichhardt, Cynthia J. O.. Dynamical freezing of active matter. Proceedings of the National Academy of Sciences 2011 10.1073/pnas.1116359108
- Wall, Michael E.; Raghavan, Sindhu; Cohn, Judith D.; Dunbar, John. Genome Majority Vote Improves Gene Predictions. PLoS Computational Biology 2011 10.1371/journal.pcbi.1002284
- Boeras, Debrah I.; Hraber, Peter T.; Hurlston, Mackenzie; Evans-Strickfaden, Tammy, et al. Role of donor genital tract HIV-1 diversity in the transmission bottleneck. Proceedings of the National Academy of Sciences 2011 10.1073/pnas.1103764108
- Berman, G. P.; Chumak, A. A.; Kamenev, D. I.; Kinion, D., et al. Non-demolition Adiabatic Measurement of the Phase Qubit State. Quantum Information and Computation 2011 http://dl.acm.org/citation.cfm?id=2230956.2230968
- Bandi, M. M.; Tallinen, T.; Mahadevan, L.. Shock-driven jamming and periodic fracture of particulate rafts. EPL (Europhysics Letters) 2011 10.1209/0295-5075/96/36008
- Ben-Naim, E.; Krapivsky, P. L.. Dynamics of random graphs with bounded degrees. Journal of Statistical Mechanics: Theory and Experiment 2011 10.1088/1742-5468/2011/11/P11008
- Aluie, H.; Kurien, S.. Joint downscale fluxes of energy and potential enstrophy in rotating stratified Boussinesq flows. EPL (Europhysics Letters) 2011 10.1209/0295-5075/96/44006
- Giani, A.; Bitar, E.; Garcia, M.; McQueen, M., et al. Smart grid data integrity attacks: characterizations and countermeasures. 2011 IEEE International Conference on Smart Grid Communications (SmartGridComm) 2011 10.1109/SmartGridComm.2011.6102324
- Kudekar, S.; Richardson, T.; Urbanke, R.. Existence and uniqueness of GEXIT curves via the Wasserstein metric. 2011 IEEE Information Theory Workshop (ITW) 2011 10.1109/ITW.2011.6089580
- Sethi, Anurag; Goldstein, Byron; Gnanakaran, S.. Quantifying Intramolecular Binding in Multivalent Interactions: A Structure-Based Synergistic Study on Grb2-Sos1 Complex. PLoS Computational Biology 2011 10.1371/journal.pcbi.1002192
- Gintautas, Vadas; Ham, Michael I.; Kunsberg, Benjamin; Barr, Shawn, et al. Model Cortical Association Fields Account for the Time Course and Dependence on Target Complexity of Human Contour Perception. PLoS Computational Biology 2011 10.1371/journal.pcbi.1002162
- Yang, Jin; Hlavacek, William S.. The efficiency of reactant site sampling in network-free simulation of rule-based models for biochemical systems. Physical Biology 2011 10.1088/1478-3975/8/5/055009
- Griffa, M.; Daub, E. G.; Guyer, R. A.; Johnson, P. A., et al. Vibration-induced slip in sheared granular layers and the micromechanics of dynamic earthquake triggering. EPL (Europhysics Letters) 2011 10.1209/0295-5075/96/14001
- Jin, Miao; Chen, Jinan; Zhang, Xiao-hong; Zhang, Ming, et al. Genetic diversity of noroviruses in Chinese adults: Potential recombination hotspots and GII-4/Den Haag-specific mutations at a putative epitope. Infection, Genetics and Evolution 2011 10.1016/j.meegid.2011.07.005
- Nemenman, Ilya; Faeder, James R; Hlavacek, William S; Jiang, Yi, et al. Selected papers from the Fourth Annual q-bio Conference on Cellular Information Processing. Physical Biology 2011 10.1088/1478-3975/8/5/050301
- Chu, H.J.; Wang, J.; Zhou, C.Z.; Beyerlein, I.J.. Self-energy of elliptical dislocation loops in anisotropic crystals and its application for defect-free core/shell nanowires. Acta Materialia 2011 10.1016/j.actamat.2011.07.066
- Yard, J.; Hayden, P.; Devetak, I. Quantum Broadcast Channels. IEEE Transactions on Information Theory 2011 10.1109/TIT.2011.2165811
- Intravaia, F.; Behunin, R.; Milonni, P. W.; Ford, G. W., et al. Consistency of a causal theory of radiative reaction with the optical theorem. Physical Review A 2011 10.1103/PhysRevA.84.035801
- Kamiya, Y; Kawashima, N; Batista, C D. Dimensional crossover in the quasi-two-dimensional Ising-O(3) model. Journal of Physics: Conference Series 2011 10.1088/1742-6596/320/1/012023
- Langan, Paul; Gnanakaran, S.; Rector, Kirk D.; Pawley, Norma, et al. Exploring new strategies for cellulosic biofuels production. Energy & Environmental Science 2011 10.1039/C1EE01268A
- Zhang, Sheng; Li, Jie; Bartell, Jason; Ke, Xianglin, et al. Ignoring Your Neighbors: Moment Correlations Dominated by Indirect or Distant Interactions in an Ordered Nanomagnet Array. Physical Review Letters 2011 10.1103/PhysRevLett.107.117204
- Brandão, Fernando G. S. L.; Christandl, Matthias; Yard, Jon. Faithful Squashed Entanglement. Communications in Mathematical Physics 2011 10.1007/s00220-011-1302-1
- Wong, Michael H.; de Pater, Imke; Asay-Davis, Xylar; Marcus, Philip S., et al. Vertical structure of Jupiter’s Oval BA before and after it reddened: What changed?. Icarus 2011 10.1016/j.icarus.2011.06.032
- Morriss-Andrews, Alex; Bellesia, Giovanni; Shea, Joan-Emma. Effects of surface interactions on peptide aggregate morphology. Journal of Chemical Physics 2011 10.1063/1.3624929
- Olson Reichhardt, C. J.; Drocco, J.; Mai, T.; Wan, M. B., et al. Active matter on asymmetric substrates. SPIE Proceedings 2011 10.1117/12.897424
- Bellesia, Giovanni; Chundawat, Shishir P. S.; Langan, Paul; Dale, Bruce E., et al. Probing the Early Events Associated with Liquid Ammonia Pretreatment of Native Crystalline Cellulose. Journal of Physical Chemistry B 2011 10.1021/jp2048844
- Velizhanin, Kirill A.; Efimov, Anatoly. Probing plasmons in graphene by resonance energy transfer. Physical Review B 2011 10.1103/PhysRevB.84.085401
- Ma, R.; Zhu, L.; Sheng, L.; Liu, M., et al. Thermoelectric and thermal transport in bilayer graphene systems. Physical Review B 2011 10.1103/PhysRevB.84.075420
- Nisoli, Cristiano; Bishop, A. R.. Thermomechanics of DNA: Theory of Thermal Stability under Load. Physical Review Letters 2011 10.1103/PhysRevLett.107.068102
- Rodriguez, Marko A.. The RDF virtual machine. Knowledge-Based Systems 2011 10.1016/j.knosys.2011.04.004
- Yang, Jin; Hlavacek, William S.. Scaffold-mediated nucleation of protein signaling complexes: Elementary principles. Mathematical Biosciences 2011 10.1016/j.mbs.2011.06.003
- Albert, Victor V.; Badaeva, Ekaterina; Kilina, Svetlana; Sykora, Milan, et al. The Frenkel exciton Hamiltonian for functionalized Ru(II)–bpy complexes. Journal of Luminescence 2011 10.1016/j.jlumin.2011.04.009
- Savukov, I; Karaulanov, T; Castro, A; Volegov, P, et al. Non-cryogenic anatomical imaging in ultra-low field regime: hand MRI demonstration. Journal of Magnetic Resonance 2011 10.1016/j.jmr.2011.05.011
- Kudekar, S.; Kasai, K.. Threshold saturation on channels with memory via spatial coupling. 2011 IEEE International Symposium on Information Theory Proceedings (ISIT) 2011 10.1109/ISIT.2011.6034031
- Kudekar, S.; Johnson, J.K.; Chertkov, M.. Linear programming based detectors for two-dimensional intersymbol interference channels. 2011 IEEE International Symposium on Information Theory Proceedings (ISIT) 2011 10.1109/ISIT.2011.6034129
- Chertkov, Michael; Stepanov, M.. Polytope of correct (linear programming) decoding and low-weight pseudo-codewords. 2011 IEEE International Symposium on Information Theory Proceedings (ISIT) 2011 10.1109/ISIT.2011.6033824
- Chertkov, M.; Yedidia, A. B.. Computing the Permanent with Belief Propagation. arXiv:1108.0065 2011 http://arxiv.org/abs/1108.0065
- Chundawat, Shishir P. S.; Bellesia, Giovanni; Uppugundla, Nirmal; da Costa Sousa, Leonardo, et al. Restructuring the Crystalline Cellulose Hydrogen Bond Network Enhances Its Depolymerization Rate. Journal of the American Chemical Society 2011 10.1021/ja2011115
- Behunin, Ryan O.; Hu, Bei-Lok. Nonequilibrium forces between atoms and dielectrics mediated by a quantum field. Physical Review A 2011 10.1103/PhysRevA.84.012902
- Liu, Yuanming; Ecke, Robert E.. Local temperature measurements in turbulent rotating Rayleigh-Bénard convection. Physical Review E 2011 10.1103/PhysRevE.84.016311
- Maniadis, P.; Lookman, T.; Bishop, A. R.. Elastically driven polaron patterns: Stripes and glass phases. Physical Review B 2011 10.1103/PhysRevB.84.024304
- Dvijotham, Krishnamurthy; Backhaus, Scott; Chertkov, Misha. Operations-Based Planning for Placement and Sizing of Energy Storage in a Grid With a High Penetration of Renewables. arXiv:1107.1382 2011 http://arxiv.org/abs/1107.1382
- Koposov, Alexey Y.; Cardolaccia, Thomas; Albert, Victor; Badaeva, Ekaterina, et al. Formation of Assemblies Comprising Ru–Polypyridine Complexes and CdSe Nanocrystals Studied by ATR-FTIR Spectroscopy and DFT Modeling. Langmuir 2011 10.1021/la200531s
- Chilappagari, S.K.; Chertkov, Michael; Vasic, B.. An Efficient Instanton Search Algorithm for LP Decoding of LDPC Codes Over the BSC. IEEE Transactions on Information Theory 2011 10.1109/TIT.2011.2146670
- Cardenas, Andres; Mihaila, Bogdan; Cooper, Fred; Saxena, Avadh. Properties of compacton-anticompacton collisions. Physical Review E 2011 10.1103/PhysRevE.83.066705
- Zhu, Lijun; Zhu, Jian-Xin. Magnetic-field-induced quantum phase transitions in the two-impurity Anderson model. Physical Review B 2011 10.1103/PhysRevB.83.245110
- Fredeman, D. J.; Tobash, P. H.; Torrez, M. A.; Thompson, J. D., et al. Computationally driven experimental discovery of the CeIr4In compound. Physical Review B 2011 10.1103/PhysRevB.83.224102
- Ben-Naim, E.; Krapivsky, P. L.. Kinetics of ring formation. Physical Review E 2011 10.1103/PhysRevE.83.061102
- Walker, David M.; Tordesillas, Antoinette; Thornton, Colin; Behringer, Robert P., et al. Percolating contact subnetworks on the edge of isostaticity. Granular Matter 2011 10.1007/s10035-011-0250-y
- Turitsyn, Konstantin; Sulc, P.; Backhaus, Scott; Chertkov, Michael. Options for Control of Reactive Power by Distributed Photovoltaic Generators. Proceedings of the IEEE 2011 10.1109/JPROC.2011.2116750
- Colgan, J.; Abdallah Jr., J.; Faenov, A. Ya.; Pikuz, T.A., et al. Observation and modeling of high resolution spectral features of the inner-shell X-ray emission produced by 10−10 contrast femtosecond-pulse laser irradiation of argon clusters. High Energy Density Physics 2011 10.1016/j.hedp.2011.01.004
- Ji, Zhengping; Luciw, M.; Weng, Juyang; Zeng, Shuqing. Incremental Online Object Learning in a Vehicular Radar-Vision Fusion Framework. Intelligent Transportation Systems, IEEE Transactions on 2011 10.1109/TITS.2010.2094188
- White, Claire E.; Provis, John L.; Proffen, Thomas; van Deventer, Jannie S. J.. Quantitative Mechanistic Modeling of Silica Solubility and Precipitation during the Initial Period of Zeolite Synthesis. Journal of Physical Chemistry C 2011 10.1021/jp2006217
- Kudekar, Shrinivas; Johnson, Jason K.; Chertkov, Misha. Improved Linear Programming Decoding using Frustrated Cycles. arXiv:1105.4665 [cs, math] 2011 http://arxiv.org/abs/1105.4665
- Velizhanin, Kirill A.; Piryatinski, Andrei. Numerical Study of Carrier Multiplication Pathways in Photoexcited Nanocrystal and Bulk Forms of PbSe. Physical Review Letters 2011 10.1103/PhysRevLett.106.207401
- Cooper, Fred; Mihaila, Bogdan; Dawson, John F.; Chien, Chih-Chun, et al. Auxiliary-field approach to dilute Bose gases with tunable interactions. Physical Review A 2011 10.1103/PhysRevA.83.053622
- Velizhanin, Kirill A.; Chien, Chih-Chun; Dubi, Yonatan; Zwolak, Michael. Driving denaturation: Nanoscale thermal transport as a probe of DNA melting. Physical Review E 2011 10.1103/PhysRevE.83.050906
- Velizhanin, Kirill A.; Piryatinski, Andrei. Probing Interband Coulomb Interactions in Semiconductor Nanostructures with 2D Double-Quantum Coherence Spectroscopy. Journal of Physical Chemistry B 2011 10.1021/jp109453y
- Nelson, Tammie; Fernandez-Alberti, Sebastian; Chernyak, Vladimir; Roitberg, Adrian E., et al. Nonadiabatic Excited-State Molecular Dynamics Modeling of Photoinduced Dynamics in Conjugated Molecules. Journal of Physical Chemistry B 2011 10.1021/jp109522g
- Li, Hao; Wu, Chao; Malinin, Sergey V.; Tretiak, Sergei, et al. Exciton Scattering on Symmetric Branching Centers in Conjugated Molecules. Journal of Physical Chemistry B 2011 10.1021/jp110317d
- Page, Katharine; White, Claire E.; Estell, Eben G.; Neder, Reinhard B., et al. Treatment of hydrogen background in bulk and nanocrystalline neutron total scattering experiments. Journal of Applied Crystallography 2011 10.1107/S0021889811001609
- Atanasov, Victor; Saxena, Avadh. Electronic properties of corrugated graphene: the Heisenberg principle and wormhole geometry in the solid state. Journal of Physics: Condensed Matter 2011 10.1088/0953-8984/23/17/175301
- Zhu, Lijun; Zhu, Jian-Xin. Coherence scale of coupled Anderson impurities. Physical Review B 2011 10.1103/PhysRevB.83.195103
- Wall, Michael E.. Structure–function relations are subtle in genetic regulatory networks. Mathematical Biosciences 2011 10.1016/j.mbs.2011.02.003
- Daub, Eric G.; Shelly, David R.; Guyer, Robert A.; Johnson, Paul A.. Brittle and ductile friction and the physics of tectonic tremor. Geophysical Research Letters 2011 10.1029/2011GL046866
- Dandoloff, Rossen; Jensen, Bjørn; Saxena, Avadh. Transparent quantum waveguide. American Journal of Physics 2011 10.1119/1.3553460
- Aluie, Hussein. Compressible Turbulence: The Cascade and its Locality. Physical Review Letters 2011 10.1103/PhysRevLett.106.174502
- White, Claire E.; Perander, Linus M.; Provis, John L.; Deventer, Jannie S. J. van. The use of XANES to clarify issues related to bonding environments in metakaolin: a discussion of the paper S. Sperinck et al., “Dehydroxylation of kaolinite to metakaolin-a molecular dynamics study,” J. Mater. Chem., 2011, 21, 2118–2125. Journal of Materials Chemistry 2011 10.1039/C1JM10379B
- White, Claire E.; Provis, John L.; Llobet, Anna; Proffen, Thomas, et al. Evolution of Local Structure in Geopolymer Gels: An In Situ Neutron Pair Distribution Function Analysis. Journal of the American Ceramic Society 2011 10.1111/j.1551-2916.2011.04515.x
- Wada, Masahisa; Nishiyama, Yoshiharu; Bellesia, Giovanni; Forsyth, Trevor, et al. Neutron crystallographic and molecular dynamics studies of the structure of ammonia-cellulose I: rearrangement of hydrogen bonding during the treatment of cellulose with ammonia. Cellulose 2011 10.1007/s10570-010-9488-5
- Gupta, Sanju; Saxena, Avadh. Geometrical interpretation and curvature distribution in nanocarbons. Journal of Applied Physics 2011 10.1063/1.3553860
- Sykes, Andrew G.. Exact solutions to the four Goldstone modes around a dark soliton of the nonlinear Schrödinger equation. Journal of Physics A: Mathematical and Theoretical 2011 10.1088/1751-8113/44/13/135206
- Cale, Evan M; Hraber, Peter; Giorgi, Elena E; Fischer, Will, et al. Epitope-specific CD8+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection. Journal of Virology 2011 10.1128/JVI.02420-10
- Salje, E. K. H.; Ding, X.; Zhao, Z.; Lookman, T., et al. Thermally activated avalanches: Jamming and the progression of needle domains. Physical Review B 2011 10.1103/PhysRevB.83.104109
- Nelson, Tammie; Fernandez-Alberti, Sebastian; Chernyak, Vladimir; Roitberg, Adrian, et al. NA-ESMD modeling of photoinduced dynamics in conjugated molecules. Bulletin of the American Physical Society 2011 http://meetings.aps.org/link/BAPS.2011.MAR.X41.8
- Nayyar, Iffat H.; Batista, Enrique R.; Tretiak, Sergei; Saxena, Avadh, et al. Localization of Electronic Excitations in Conjugated Polymers Studied by DFT. Journal of Physical Chemistry Letters 2011 10.1021/jz101740w
- Loxley, P. N.; Bettencourt, L. M.. Visually-salient contour detection using a V1 neural model with horizontal connections. arXiv:1103.3531 2011 http://arxiv.org/abs/1103.3531
- Berman, G. P.; Gorshkov, V. N.; Torous, S. V.. Scintillation reduction for laser beams propagating through turbulent atmosphere. Journal of Physics B: Atomic, Molecular and Optical Physics 2011 10.1088/0953-4075/44/5/055402
- Backhaus, Scott; Turitsyn, Konstantin; Ecke, R. E.. Convective Instability and Mass Transport of Diffusion Layers in a Hele-Shaw Geometry. Physical Review Letters 2011 10.1103/PhysRevLett.106.104501
- Zhuang, Zhuoyun; Jewett, Andrew I.; Kuttimalai, Silvan; Bellesia, Giovanni, et al. Assisted Peptide Folding by Surface Pattern Recognition. Biophysical Journal 2011 10.1016/j.bpj.2010.12.3735
- Castellana, Michele; Zdeborová, Lenka. Adversarial satisfiability problem. Journal of Statistical Mechanics: Theory and Experiment 2011 10.1088/1742-5468/2011/03/P03023
- Loxley, P. N.; Bettencourt, L. M.; Kenyon, G. T.. Ultra-fast detection of salient contours through horizontal connections in the primary visual cortex. EPL (Europhysics Letters) 2011 10.1209/0295-5075/93/64001
- Dunbar, John; Cohn, Judith D.; Wall, Michael E.. Consistency of gene starts among Burkholderia genomes. BMC Genomics 2011 10.1186/1471-2164-12-125
- Whitney, James B.; Hraber, Peter T.; Luedemann, Corinne; Giorgi, Elena E., et al. Genital Tract Sequestration of SIV following Acute Infection. PLoS Pathogens 2011 10.1371/journal.ppat.1001293
- Turitsyn, Konstantin S.; Chertkov, Michael; Vucelja, Marija. Irreversible Monte Carlo algorithms for efficient sampling. Physica D: Nonlinear Phenomena 2011 10.1016/j.physd.2010.10.003
- Lemons, Nathan W.; Hu, Bin; Hlavacek, William S.. Hierarchical graphs for rule-based modeling of biochemical systems. BMC Bioinformatics 2011 10.1186/1471-2105-12-45
- Sethi, Anurag; Vu, Dung; Gnanakaran, S.. Conformational and Spectroscopic Characterization of Intrinsically Disordered Regions in Proteins. Biophysical Journal 2011 10.1016/j.bpj.2010.12.283
- Tordesillas, Antoinette; Lin, Qun; Zhang, Jie; Behringer, R. P., et al. Structural stability and jamming of self-organized cluster conformations in dense granular materials. Journal of the Mechanics and Physics of Solids 2011 10.1016/j.jmps.2010.10.007
- Santamore, D. H.; Timmermans, E.. Pseudospin and spin–spin interactions in ultracold alkali atoms. New Journal of Physics 2011 10.1088/1367-2630/13/2/023043
- Asay-Davis, Xylar S.; Marcus, Philip S.; Wong, Michael H.; de Pater, Imke. Changes in Jupiter’s zonal velocity between 1979 and 2008. Icarus 2011 10.1016/j.icarus.2010.11.018
- Krzakala, Florent; Ricci-Tersenghi, Federico; Sherrington, David; Zdeborová, Lenka. No spin glass phase in the ferromagnetic random-field random-temperature scalar Ginzburg–Landau model. Journal of Physics A: Mathematical and Theoretical 2011 10.1088/1751-8113/44/4/042003
- Dandoloff, Rossen; Saxena, Avadh. Heisenberg spins on a bilayer connected by a neck and other geometries with a characteristic length scale. Journal of Physics A: Mathematical and Theoretical 2011 10.1088/1751-8113/44/4/045203
- White, Claire E.; Provis, John L.; Gordon, Laura E.; Riley, Daniel P., et al. Effect of Temperature on the Local Structure of Kaolinite Intercalated with Potassium Acetate. Chemistry of Materials 2011 10.1021/cm102648n
- Berman, G. P.; Gorshkov, V. N.; Torous, S. V.. Scintillation reduction for combined Gaussian-vortex beam propagating through turbulent atmosphere. Proc. SPIE 7924, Atmospheric and Oceanic Propagation of Electromagnetic Waves V 2011 10.1117/12.876218
- Krzakala, Florent; Zdeborová, Lenka. On melting dynamics and the glass transition. II. Glassy dynamics as a melting process. Journal of Chemical Physics 2011 10.1063/1.3506843
- Krzakala, Florent; Zdeborová, Lenka. On melting dynamics and the glass transition. I. Glassy aspects of melting dynamics. Journal of Chemical Physics 2011 doi:10.1063/1.3506841
- Drocco, J.; Olson Reichhardt, C.; Reichhardt, C.. Characterizing plastic depinning dynamics with the fluctuation theorem. European Physical Journal E: Soft Matter and Biological Physics 2011 10.1140/epje/i2011-11117-5
- Gnanakaran, S.; Bhattacharya, Tanmoy; Daniels, Marcus; Keele, Brandon F., et al. Recurrent Signature Patterns in HIV-1 B Clade Envelope Glycoproteins Associated with either Early or Chronic Infections. PLoS Pathogens 2011 10.1371/journal.ppat.1002209
- Zhang, Ming; Perelson, Alan S; Tung, Chang-Shung. RNA Structural Motifs. eLS 2011 http://onlinelibrary.wiley.com/doi/10.1002/9780470015902.a0003132.pub2/abstract
- P. N. Loxley, L. M. Bettencourt. Visually-salient contour detection using a V1 neural model with horizontal connections. 2011
- Vrugt, J. A.; ter, Braak C.J.F.; Diks, C.G.H.; Robinson, B. A., et al. Accelerating Markov Chain Monte Carlo Simulation by Differential Evolution with Self-Adaptive Randomized Subspace Sampling. International Journal of Nonlinear Sciences and Numerical Simulation 2011 10.1515/IJNSNS.2009.10.3.273
- Wang, Moran; Chen, Qun; Kang, Qinjun; Pan, Ning, et al. Nonlinear effective properties of unsaturated porous materials. International Journal of Nonlinear Sciences and Numerical Simulation 2011 10.1515/IJNSNS.2010.11.1.49
- Liu, X.B.; Wang, M.; Meng, J.; Ben-Naim, E., et al. Minimum Entransy Dissipation Principle for Optimization of Transport Networks. International Journal of Nonlinear Sciences and Numerical Simulation 2011 10.1515/IJNSNS.2010.11.2.113
- Chandrasekaran, V.; Chertkov, M.; Gamarnik, D.; Shah, D., et al. Counting Independent Sets Using the Bethe Approximation. SIAM Journal on Discrete Mathematics 2011 10.1137/090767145
- Zdeborová, L.; Krzakala, F.. Quiet Planting in the Locked Constraint Satisfaction Problems. SIAM Journal on Discrete Mathematics 2011 10.1137/090750755
- Zhu, Lijun; Zhu, Jian-Xin. Superconducting pairing of interacting electrons: implications from the two-impurity Anderson model. Journal of Physics: Conference Series 2011 10.1088/1742-6596/273/1/012068
- Kudekar, S.; Macris, N.. Decay of Correlations for Sparse Graph Error Correcting Codes. SIAM Journal on Discrete Mathematics 2011 10.1137/090751827
- He, Minxue; Hogue, Terri S.; Franz, Kristie J.; Margulis, Steven A., et al. Characterizing parameter sensitivity and uncertainty for a snow model across hydroclimatic regimes. Advances in Water Resources 2011 10.1016/j.advwatres.2010.10.002
- Bellesia, Giovanni; Jewett, Andrew I.; Shea, Joan–Emma. Relative stability of de novo four–helix bundle proteins: Insights from coarse grained molecular simulations. Protein Science 2011 10.1002/pro.605
- Gutfraind, Alexander; Hagberg, Aric A.; Izraelevitz, David; Pan, Feng. Interdiction of a Markovian Evader. Proceedings of the 12th INFORMS Computing Society Conference on OR, Computing, and Homeland Defense 2011 http://arxiv.org/abs/1009.0556
- Mahmud, K. W.; Duchon, E. N.; Kato, Y.; Kawashima, N., et al. Finite-temperature study of bosons in a two-dimensional optical lattice. Physical Review B 2011 10.1103/PhysRevB.84.054302
- Kato, Yasuyuki; Batista, C. D.; Vekhter, I.. Antiferromagnetic Order in Pauli-Limited Unconventional Superconductors. Physical Review Letters 2011 10.1103/PhysRevLett.107.096401
- Lynch, Rebecca M; Rong, Rong; Boliar, Saikat; Sethi, Anurag, et al. The B cell response is redundant and highly focused on V1V2 during early subtype C infection in a Zambian seroconverter. Journal of Virology 2011 10.1128/JVI.02006-10
- Skar, Helena; Gutenkunst, Ryan N.; Wilbe Ramsay, Karin; Alaeus, Annette, et al. Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease Displays Persistence of Multiple env Subpopulations Consistent with Neutrality. PLoS ONE 2011 10.1371/journal.pone.0021747
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